Tyrolean DNA admixture and genetic structure: Unterschied zwischen den Versionen

Aus Tirolensis Wiki
Zur Navigation springen Zur Suche springen
 
(24 dazwischenliegende Versionen desselben Benutzers werden nicht angezeigt)
Zeile 4: Zeile 4:
[[Bild:Dodecad Oracle Clos Calc TiGenID006.png|thumb|admixture example]]
[[Bild:Dodecad Oracle Clos Calc TiGenID006.png|thumb|admixture example]]
Publications:  
Publications:  
* [http://dx.doi.org/10.3378/027.081.0629 '''South Tyrolean Isolated Populations''' Y-DNA, mtDNA, and 8 Alu Polymorphisms], Pichler, Mueller, Stefanov et al. 2006 (277 samples)
* [http://dx.doi.org/10.3378/027.081.0629 '''South Tyrolean Isolated Populations''' Y-DNA (UEP), mtDNA, and 8 Alu Polymorphisms], Pichler, Mueller, Stefanov et al. 2006 (277 samples)<br>Y-DNA Puster Valley (n=35) P* (xR1a) 47%, BR* (xDE, JR) 34%, E* (xE3a) 9%, R1a* 6%, L 3%, Y* (xBR, A3b2) 3%<br>Y-DNA Eisack Valley (n=34) P* (xR1a) 46%, BR* (xDE, JR) 29%, R1a* 15%, E* (xE3a) 3%, K* (xL, N3, O2b, P) 3%, E3a 3%<br>Y-DNA Badiot Valley (n=24) P* (xR1a) 58%, BR* (xDE, JR) 21%, R1a* 13%, L 8%<br>Y-DNA Lower Vinschgau (n=32) P* (xR1a) 47%, BR* (xDE, JR), R1a1 13%, E* (xE3a) 3%, K* (xL, N3, O2b, P) 3%<br>Y-DNA Upper Vinschgau (n=32) P* (xR1a) 56%, BR* (xDE, JR) 31%, E* (xE3a) 9%, R1a1 3% <br>Y-DNA Stilfs (n=37) P* (xR1a) 35%, BR* (xDE, JR) 32%, E* (xE3a) 14%, K* (xL, N3, O2b, P) 14%, R1a1 3%, E3a 3%<br>Y-DNA South Tyrol (n=194) P* (xR1a) 47%, BR* (xDE, JR) 31%, E* (xE3a) 7%, R1a* 5%, K* (xL, N3, O2b, P) 4%, R1a1 3%, L 2%, E3a 1%, Y* (xBR, A3b2) 1%
* [http://dx.doi.org/10.1186/1471-2350-8-29 '''South Tyrol three microisolates''' (MICROS) Genetic study], Pattaro et al. 2007 (1175 participants)
* [http://dx.doi.org/10.1186/1471-2350-8-29 '''South Tyrol three microisolates''' (MICROS) Genetic study], Pattaro et al. 2007 (1175 participants)
* [http://dx.doi.org/10.1111/j.1469-1809.2006.00274.x '''South Tyrol Isolates''' Value for Genetic Dissection of Complex Diseases], Marroni, Pichler et al. 2006 (403 males)
* [http://dx.doi.org/10.1111/j.1469-1809.2006.00274.x '''South Tyrol Isolates''' Value for Genetic Dissection of Complex Diseases], Marroni, Pichler et al. 2006 (403 males)


== Y-DNA and mtDNA ==
== Y-DNA and mtDNA ==
* [http://dx.doi.org/10.1038/sj.ejhg.5201906'''South Tyrol isolates''' mtDNA Y-DNA - Ladin communities], Thomas et al. 2007 (263 men, 56 LVB, 46 LVG, 52 GVL, 50 GVU, 59 ITA)<br>LV (Ladin, n=102): ~R1b 65%, ~G+I 13%, J 12%, L 6%, ~E 3%, R1a 2% <br>GV (Vinschgau, n=102): ~R1b 42%, ~G+I 25%, J 14%, ~E 8%, L 2%, R1a 0% <br>ITA (Ital.speakers BZ, n=59): ~R1b 37%, ~G+I 25%, J 15%, ~E 12%, ~K*(S?) 5%, R1a 3%, L 2%
* [http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0081704 '''Demographic Histories, Isolation and Social Factors as Determinants of the Genetic Structure of Alpine Linguistic Groups''' Y-DNA, mtDNA], Coia, Anagnostou, Ferri, Brisighelli, Busby, Capelli, et al 2013 (609 samples)
* [http://dx.doi.org/10.1038/sj.ejhg.5201906'''South Tyrol isolates''' mtDNA Y-DNA - Ladin communities], Thomas et al. 2007 (263 men, 56 LVB, 46 LVG, 52 GVL, 50 GVU, 59 ITA)<br>LV (Ladin, n=102, LVB Badiot n=56, LVG Gherdëin n=46): ~R1b 65%, ~G+I 13%, J 12% (LVB 5%, LVG 20%), L 6% (LVB 9%, LVG 2%), ~E 3%, R1a 2% (LVB 0%, LVG 4%)<br>GV (Vinschgau German, n=102, GVL Latsch n=52, GVU Laas/Prad n=50): ~R1b 42%, ~G+I 25%, J 14%, R1a 9% (GVL 12%, GVU 6%), ~E 8% (GVL 6%, GVU 10%), L 2%<br>ITA (Ital.speakers BZ, n=59): ~R1b 37%, ~G+I 25%, J 15%, ~E 12%, ~K*(S?) 5%, R1a 3%, L 2%


== Y-DNA (Y-Chromosome, Paternal Line) ==
== Y-DNA (Y-Chromosome, Paternal Line) ==
[[Tyrolean Y-DNA]]
Publications
* '''Tyrolean Alps''' Y-chromosome Variability, sample evaluation, collection of 3.800 blood samples begins in Jan. 2007, [http://gerichtsmedizin.at/tyrolean_alps.html project description], German Project Site: [http://tirol-studie.at/ historisch-genetischer Hintergrund Tirol]
* '''Tyrolean Alps''' Y-chromosome Variability, sample evaluation, collection of 3.800 blood samples begins in Jan. 2007, [http://gerichtsmedizin.at/tyrolean_alps.html project description], German Project Site: [http://tirol-studie.at/ historisch-genetischer Hintergrund Tirol]
* [http://link.springer.com/article/10.1007%2Fs00414-012-0751-1?LI=true Frequency Y-chromosome Tyrolean district of '''Reutte'''], Erhart, Berger, Niederstätter et al. 2012 (261 samples, 17 Y-STRs, 19 Y-SNPs)<br>R1b-U106/S21 20,9%, R1b-M269* 13,6%, R1b-U152/S28 12,4%, I1-M253 10,5%, G2a-P15 8,5%, E1b-M78 8,1%, J-M304 8,1%, R1a-M17 7,8%, I2-M223 2,7%, I2-P37.2 2,7%, K-M9* (LT, NO) 0,8%, P-M45* (Q) 0,8%, G-M201* 0,4%, I-M170* 0,4%, R1-M173*
* [http://dx.doi.org/10.1371/journal.pone.0041885 '''East Tyrolean''' Dissection of Y Chromosome Variation], Niederstätter, Rampl, Erhart, Pitterl, Oberacher et al. 2012 (270 samples, 17 Y-STRs, 27 Y-SNPs)<br>R1b-U106/S21 18,9%, I1-M253 15,9%, R1a-M17 14,1%, R1b-U152/S28 12,6%, J-M304 8,9%, G2a-P15 7,4%, R1b-M412/S167* 4,8%, E1b-M78 4,4%, R1b-S116* 3,0%, I2-M223 2,6 %, R1b-L23/S141* 1,9%
* [http://dx.doi.org/10.1371/journal.pone.0041885 '''East Tyrolean''' Dissection of Y Chromosome Variation], Niederstätter, Rampl, Erhart, Pitterl, Oberacher et al. 2012 (270 samples, 17 Y-STRs, 27 Y-SNPs)<br>R1b-U106/S21 18,9%, I1-M253 15,9%, R1a-M17 14,1%, R1b-U152/S28 12,6%, J-M304 8,9%, G2a-P15 7,4%, R1b-M412/S167* 4,8%, E1b-M78 4,4%, R1b-S116* 3,0%, I2-M223 2,6 %, R1b-L23/S141* 1,9%
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.158 '''Tyrol''' Y-SNPs Y-chromosome haplogroup R1b], Niederstätter et al. 2008 (135 individuals)
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.158 '''Tyrol''' Y-SNPs Y-chromosome haplogroup R1b], Niederstätter et al. 2008 (135 individuals)<br>R1b-U106/S21 60%, R1b-U152/S28 21%, R1b-U198 2%, R1b* 19%
* [http://dx.doi.org/10.1007/s00414-005-0546-8  '''Tirol''' Y-STR typing], Berger, Niederstätter et al. 2005 (135 unrelated men and 70 sons)
* [http://dx.doi.org/10.1007/s00414-005-0546-8  '''Tirol''' Y-STR typing], Berger, Niederstätter et al. 2005 (135 unrelated men and 70 sons)
* [https://doi.org/10.1016/j.fsigen.2016.07.009 Y-STRs five municipalities '''Eastern N. Tyrol'''], Niederstätter, Berger, et al. 2016 (551 men, 17 Yfiler, 13 RM Y-STRs)<br>No % access so far


== mtDNA (mitochondrial DNA, Maternal Line) ==
== mtDNA (mitochondrial DNA, Maternal Line) ==
Zeile 26: Zeile 31:
=== North Italy ===
=== North Italy ===
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.083 Microgeographic Y '''haplotypes Italy'''], Pelotti et al. 2008 (1288 + 526 samples from “regional” or “local” recruitment)
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.083 Microgeographic Y '''haplotypes Italy'''], Pelotti et al. 2008 (1288 + 526 samples from “regional” or “local” recruitment)
* [http://dx.doi.org.sci-hub.org/10.1016/j.forsciint.2007.06.007 haplotypes and haplogroups '''differences Rimini'''], Ferri et al. 2008 <br>98 from Rimini: R1b 51%, J2 17%, E3b1 11%, G 7%, E3b3a 4%, I* 4%, N3 2% <br>65 from Valmarecchia: R1b 46%, J2 15%, E3b1 18%, G 11%,  I* 3%
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.025 Microgeographic Y '''variation Ravenna''''s area], Pelotti et al. 2008 (122 samples - 100% diverse, mainly R1b and E3b1)
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.025 Microgeographic Y '''variation Ravenna''''s area], Pelotti et al. 2008 (122 samples - 100% diverse, mainly R1b and E3b1)
* [http://dx.doi.org.sci-hub.org/10.1016/j.forsciint.2007.06.007 haplotypes and haplogroups '''differences Rimini'''], Ferri et al. 2008 <br>98 from Rimini: R1b 51%, J2 17%, E3b1 11%, G 7%, E3b3a 4%, I* 4%, N3 2% <br>65 from Valmarecchia: R1b 46%, J2 15%, E3b1 18%, G 11%,  I* 3%
* [http://dx.doi.org/10.1007/s00414-005-0054-x haplotypes in '''Northeast Italian''' population], Turrina et al. 2006 (155 Y-STRs)


=== Germany (South) ===
=== Germany (South) ===
* [http://www.nature.com/ejhg/journal/vaop/ncurrent/abs/ejhg2012190a.html Paternal genetic landscape of Polish and German (incl. '''Bavarian Augsburg/Swabia''')], Rębała, Martínez-Cruz, Tönjes, Kovacs et al. 2012 (Augsburg/Swabia N=218, 39 HG, 19 STR)<br>I1-M253* 13,8%, R1b-U106* 11,5%, R1b-U106-L48 9,2%, R1a-M17-M458 7,8%, E1b-V13 6,9%, R1b-P312* 6,9%, R1b-U152-L2* 5,5%, R1a-M17* 4,6%, R1b-U152* 3,7%, G2a-P15 3,2%, I1-M253-L22 3,2%, J2a-M410-M67* 3,2%, I2-M423 2,8%, R1b-L23* 2,8%, I2-M223 2,3%, J2a-M410* 2,3%, J2b-M241 1,4%, R1b-L21 1,4%, etc.
=== Switzerland ===
* [https://doi.org/10.1016/j.fsigen.2020.102345 The Y-chromosomal haplotype and haplogroup distribution of modern Switzerland], Zieger & Utz 2020 (N=606, 27 Y-STRs, 34 Y-SNPs)<br>R1b-U152 26%, R1b-M269 16%, R1b-U106 13%, I1-M253 10%, G-M201 9%, E1b-M35 7%, I2-M223 4%, R1a-M198 4%, J2a-M410 3%, J2b-M102 3%, I2-P215 2%, KLT-M9 1%


=== Italy (incl. Mid)===
=== Italy (incl. Mid)===
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.083 Microgeographic Y '''haplotypes Italy'''], Pelotti et al. 2008 (1288 + 526 samples from “regional” or “local” recruitment)
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.083 Microgeographic Y '''haplotypes Italy'''], Pelotti et al. 2008 (1288 + 526 samples from “regional” or “local” recruitment)
* [http://dx.doi.org/10.1016/j.ympev.2006.11.030 '''Italian''' Y-DNA variation], [http://vetinari.sitesled.com/meso.pdf PDF], Capelli et al. 2007 (~700 individuals from 12 different regions)
* [http://dx.doi.org/10.1016/j.fsigss.2007.10.170 '''J2''' in an Italian sample], Onofri et al. 2008 (Over 200 M172 for 7 Sub SNPs)
* [http://dx.doi.org/10.1016/j.ympev.2006.11.030 '''Italian''' Y-DNA variation], [http://vetinari.sitesled.com/meso.pdf PDF], Capelli et al. 2007 (~700 individuals from 12 different regions)<br>Val Badia n=34: R1(xR1a) 68%, K*(xN3,P) 9%, J2 9%, E3b1 6%, I*(xI1b2) 6%, G 3%
* [http://dx.doi.org/10.1007/s00414-007-0153-y sub-Apennine populations of Central Italy by SNP and STR analysis], Onofri et al. 2007 (17 Y-STR, 37 Y-SNPs in 162 subjects)
* [http://veprints.unica.it/25/1/contu_daniela.pdf '''Sardinia''' isle Y-DNA], Contu 2007 (376 Y from 3 different regions)
* [http://veprints.unica.it/25/1/contu_daniela.pdf '''Sardinia''' isle Y-DNA], Contu 2007 (376 Y from 3 different regions)
* [http://dx.doi.org/10.1002/ajpa.10265 '''Corsica, Sardinia and Sicily''' Peopling Y-DNA], Francalacci et al. 2003
* [http://dx.doi.org/10.1002/ajpa.10265 '''Corsica, Sardinia and Sicily''' Peopling Y-DNA], Francalacci et al. 2003
Zeile 44: Zeile 56:
* [http://dx.doi.org/10.1016/j.gene.2012.01.030 '''Serbia''' Paleolithic Y-DNA ], Regueiro et al. 2012 (103 samples, 104 Y-SNPs)
* [http://dx.doi.org/10.1016/j.gene.2012.01.030 '''Serbia''' Paleolithic Y-DNA ], Regueiro et al. 2012 (103 samples, 104 Y-SNPs)
* [http://dx.doi.org/10.1007/s00414-003-0394-3 '''Slovenia''': Y-DNA and mtDNA], Manfreda Vakar & Vrečko 2010 (320 Y, 329 mt)
* [http://dx.doi.org/10.1007/s00414-003-0394-3 '''Slovenia''': Y-DNA and mtDNA], Manfreda Vakar & Vrečko 2010 (320 Y, 329 mt)
* [http://dx.doi.org/10.1111/10.1007/s00414-010-0432-x Y variation in '''Albanian''' populations], Ferri et al. 2010 (12 Y-STRs in two major and two minor populations), [http://dienekes.blogspot.it/2010/03/y-chromosomes-of-albanian-populations.html Dienekes]
* [http://www.veneti.info/prispevki/multilingua/english/263-y-dna-routes-of-the-ancestors-of-slovenes Slovenes Y-DNA Haplogroups], Veneti.info 2008 (n=310, R1a 37%, I2a 22%, R1b 16%, I1 10%, E1b 5%, J 3%, G 3%, I2b/L/T 3%)
* [http://dx.doi.org/10.1111/j.1469-1809.2005.00251.x/full '''Balkan'''s Y-DNA and mtDNA landscape], Bosch et al. 2006 (~400 Y, ~380 mt)
* [http://dx.doi.org/10.1111/j.1469-1809.2005.00251.x/full '''Balkan'''s Y-DNA and mtDNA landscape], Bosch et al. 2006 (~400 Y, ~380 mt)
* [http://dx.doi.org/10.1111/j.1529-8817.2005.00190.x/full '''Bosnia-Herzegovina''': Y-DNA], Marjanovic et al. 2005 (90 Croats, 81 Serbs and 85 Bosniacs)
* [http://dx.doi.org/10.1111/j.1529-8817.2005.00190.x/full '''Bosnia-Herzegovina''': Y-DNA], Marjanovic et al. 2005 (90 Croats, 81 Serbs and 85 Bosniacs)
Zeile 61: Zeile 75:
* '''Neolithic Spain''', Lacan et al 2011 (7000 BPE, Y-DNA 5 G2a, 1 E-V13), [http://dx.doi.org/10.1073/pnas.1113061108 PNAS journal (Open-access after 6 months)], [http://www.pnas.org/content/early/2011/10/24/1113061108.full.pdf+html PDF], [http://dienekes.blogspot.it/2011/11/y-haplogroups-e-v13-and-g2a-in.html Dienekes Blog]
* '''Neolithic Spain''', Lacan et al 2011 (7000 BPE, Y-DNA 5 G2a, 1 E-V13), [http://dx.doi.org/10.1073/pnas.1113061108 PNAS journal (Open-access after 6 months)], [http://www.pnas.org/content/early/2011/10/24/1113061108.full.pdf+html PDF], [http://dienekes.blogspot.it/2011/11/y-haplogroups-e-v13-and-g2a-in.html Dienekes Blog]
* '''Neolithic Linearbandkeramik''' Derenburg, Haak et al 2010 (7200 BPE, 2 F*(xG,H,I,J,K), 1 G2a3), [http://dx.doi.org/10.1371/journal.pbio.1000536 PLoS open-access journal], [http://www.plosbiology.org/article/fetchObjectAttachment.action;jsessionid=3DD05A618FCAAB060655F451860677C8?uri=info%3Adoi%2F10.1371%2Fjournal.pbio.1000536&representation=PDF PDF], [http://dienekes.blogspot.it/2010/11/near-eastern-origin-of-european.html Dienekes Blog]
* '''Neolithic Linearbandkeramik''' Derenburg, Haak et al 2010 (7200 BPE, 2 F*(xG,H,I,J,K), 1 G2a3), [http://dx.doi.org/10.1371/journal.pbio.1000536 PLoS open-access journal], [http://www.plosbiology.org/article/fetchObjectAttachment.action;jsessionid=3DD05A618FCAAB060655F451860677C8?uri=info%3Adoi%2F10.1371%2Fjournal.pbio.1000536&representation=PDF PDF], [http://dienekes.blogspot.it/2010/11/near-eastern-origin-of-european.html Dienekes Blog]
=== Migration ===
* '''Brazilian''' Y-Chromosome Lineages, Carvalho-Silva et al. 2001, [http://dx.doi.org/10.1086/316931]


== Europe / Mediterranean ==
== Europe / Mediterranean ==

Aktuelle Version vom 8. Juni 2021, 22:49 Uhr

Interesting information for genetic genealogy and populations genetics of human DNA from the historical Tyrol region (South Tyrol, North Tyrol, East Tyrol, Trentino) and bordering regions of Central Europe: Austria (Vorarlberg, Salzburg, Carinthia/Kärnten, Upper Austria/Oberösterreich, Styria/Steiermark), North Italy (Veneto, Friuli-Venezia Giulia, Lombardy, Piemonte, Aosta, Emilia-Romagna, Tuscany), Switzerland (Graubünden/Grisons, St. Gallen), South Germany (Bavaria, Baden-Württemberg), Slovenia, Croatia, East/Alpine France (Alsace, Franche-Comté, Lorraine, Rhône-Alpes), Czechia, Slovakia, Hungary, Serbia, Romania.

Autosomal and complete genome

admixture example

Publications:

  • South Tyrolean Isolated Populations Y-DNA (UEP), mtDNA, and 8 Alu Polymorphisms, Pichler, Mueller, Stefanov et al. 2006 (277 samples)
    Y-DNA Puster Valley (n=35) P* (xR1a) 47%, BR* (xDE, JR) 34%, E* (xE3a) 9%, R1a* 6%, L 3%, Y* (xBR, A3b2) 3%
    Y-DNA Eisack Valley (n=34) P* (xR1a) 46%, BR* (xDE, JR) 29%, R1a* 15%, E* (xE3a) 3%, K* (xL, N3, O2b, P) 3%, E3a 3%
    Y-DNA Badiot Valley (n=24) P* (xR1a) 58%, BR* (xDE, JR) 21%, R1a* 13%, L 8%
    Y-DNA Lower Vinschgau (n=32) P* (xR1a) 47%, BR* (xDE, JR), R1a1 13%, E* (xE3a) 3%, K* (xL, N3, O2b, P) 3%
    Y-DNA Upper Vinschgau (n=32) P* (xR1a) 56%, BR* (xDE, JR) 31%, E* (xE3a) 9%, R1a1 3%
    Y-DNA Stilfs (n=37) P* (xR1a) 35%, BR* (xDE, JR) 32%, E* (xE3a) 14%, K* (xL, N3, O2b, P) 14%, R1a1 3%, E3a 3%
    Y-DNA South Tyrol (n=194) P* (xR1a) 47%, BR* (xDE, JR) 31%, E* (xE3a) 7%, R1a* 5%, K* (xL, N3, O2b, P) 4%, R1a1 3%, L 2%, E3a 1%, Y* (xBR, A3b2) 1%
  • South Tyrol three microisolates (MICROS) Genetic study, Pattaro et al. 2007 (1175 participants)
  • South Tyrol Isolates Value for Genetic Dissection of Complex Diseases, Marroni, Pichler et al. 2006 (403 males)

Y-DNA and mtDNA

Y-DNA (Y-Chromosome, Paternal Line)

Tyrolean Y-DNA Publications

mtDNA (mitochondrial DNA, Maternal Line)

Emigrants

Bordering Regions

North Italy

Germany (South)

  • Paternal genetic landscape of Polish and German (incl. Bavarian Augsburg/Swabia), Rębała, Martínez-Cruz, Tönjes, Kovacs et al. 2012 (Augsburg/Swabia N=218, 39 HG, 19 STR)
    I1-M253* 13,8%, R1b-U106* 11,5%, R1b-U106-L48 9,2%, R1a-M17-M458 7,8%, E1b-V13 6,9%, R1b-P312* 6,9%, R1b-U152-L2* 5,5%, R1a-M17* 4,6%, R1b-U152* 3,7%, G2a-P15 3,2%, I1-M253-L22 3,2%, J2a-M410-M67* 3,2%, I2-M423 2,8%, R1b-L23* 2,8%, I2-M223 2,3%, J2a-M410* 2,3%, J2b-M241 1,4%, R1b-L21 1,4%, etc.

Switzerland

Italy (incl. Mid)

South Italy

Balkan

Ancient

Migration

  • Brazilian Y-Chromosome Lineages, Carvalho-Silva et al. 2001, [1]

Europe / Mediterranean

see also

South Tyrol (Ötzi’s homeland) historical migrations